OBO Foundry dashboard analysis¶

Back to dashboard main page
/tmp/ipykernel_395/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 2 2925.5 3611.194332 372.0 1648.75 2925.5 4202.25 5479.0
Declaration 2 714.0 748.118974 185.0 449.50 714.0 978.50 1243.0
DisjointClasses 2 22.0 28.284271 2.0 12.00 22.0 32.00 42.0
InverseObjectProperties 2 18.0 21.213203 3.0 10.50 18.0 25.50 33.0
SubClassOf 2 925.5 1099.551045 148.0 536.75 925.5 1314.25 1703.0
SubObjectPropertyOf 2 49.0 57.982756 8.0 28.50 49.0 69.50 90.0
SymmetricObjectProperty 2 3.5 3.535534 1.0 2.25 3.5 4.75 6.0
DataPropertyRange 2 17.0 9.899495 10.0 13.50 17.0 20.50 24.0
ObjectPropertyRange 1 43.5 61.518290 0.0 21.75 43.5 65.25 87.0
ObjectPropertyAssertion 1 1.0 1.414214 0.0 0.50 1.0 1.50 2.0
ObjectPropertyDomain 1 45.5 64.346717 0.0 22.75 45.5 68.25 91.0
SubPropertyChainOf 1 7.5 10.606602 0.0 3.75 7.5 11.25 15.0
Rule 1 2.0 2.828427 0.0 1.00 2.0 3.00 4.0
SubAnnotationPropertyOf 1 12.0 16.970563 0.0 6.00 12.0 18.00 24.0
SubDataPropertyOf 1 5.5 7.778175 0.0 2.75 5.5 8.25 11.0
InverseFunctionalObjectProperty 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
IrrefexiveObjectProperty 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
EquivalentClasses 1 11.0 15.556349 0.0 5.50 11.0 16.50 22.0
FunctionalObjectProperty 1 2.5 3.535534 0.0 1.25 2.5 3.75 5.0
FunctionalDataProperty 1 3.0 4.242641 0.0 1.50 3.0 4.50 6.0
EquivalentObjectProperties 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
DifferentIndividuals 1 1.0 1.414214 0.0 0.50 1.0 1.50 2.0
DataPropertyDomain 1 5.5 7.778175 0.0 2.75 5.5 8.25 11.0
ClassAssertion 1 10.0 14.142136 0.0 5.00 10.0 15.00 20.0
AnnotationPropertyRangeOf 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
AnnotationPropertyDomain 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
TransitiveObjectProperty 1 4.5 6.363961 0.0 2.25 4.5 6.75 9.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 2 2593.0 3033.488091 448.0 1520.50 2593.0 3665.50 4738.0
DataExactCardinality 1 3.0 4.242641 0.0 1.50 3.0 4.50 6.0
DataMinCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
DataSomeValuesFrom 1 13.0 18.384776 0.0 6.50 13.0 19.50 26.0
ObjectAllValuesFrom 1 16.5 23.334524 0.0 8.25 16.5 24.75 33.0
ObjectComplementOf 1 15.0 21.213203 0.0 7.50 15.0 22.50 30.0
ObjectExactCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectIntersectionOf 1 14.0 19.798990 0.0 7.00 14.0 21.00 28.0
ObjectMaxCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectMinCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectOneOf 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
ObjectSomeValuesFrom 1 334.0 472.347330 0.0 167.00 334.0 501.00 668.0
ObjectUnionOf 1 21.0 29.698485 0.0 10.50 21.0 31.50 42.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 mcro 0.446 0.891 0.0
0 gndo 0.433 0.867 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 2.0 0.4395 0.009192 0.433 0.43625 0.4395 0.44275 0.446
score_dash 2.0 0.8790 0.016971 0.867 0.87300 0.8790 0.88500 0.891
score_impact 2.0 0.0000 0.000000 0.000 0.00000 0.0000 0.00000 0.000

OBO dependency graph